Open Research Index

217 records

  1. How Claude is uplifting biomolecular modeling

    Anthropic

    Anthropic ScienceSep 17, 2026q-bio.BMscore 0

  2. Graph construction in QUBO-based recursive phylogenetic tree reconstruction

    Yoshiki Kanazawa, Takahiko Koyama

    arXivSep 15, 2026q-bio.PEscore 0

  3. Navigating the Delicate Geometry of Beehive Mite Infestation with Optimal Control

    Julia Saff, Bhargav R. Karamched

    arXivSep 14, 2026q-bio.PEscore 0

  4. Evolution of Fast and Slow Life Histories in Resource-Constrained Populations with Mass-Mortality Events

    Éloi Martin, David Steinsaltz

    arXivSep 13, 2026q-bio.PEscore 0

  5. Structures of the Basic Reproduction Number $R_0$ Across Compartmental Disease Models

    Zhuolin Qu, Abhi Ashwath

    arXivSep 12, 2026q-bio.PEscore 0

  6. GrassTop: Grassmannian k-mer Topology for Viral Classification and Phylogenetic Analysis

    Xiang Xiang Wang, Guo-Wei Wei

    arXivSep 11, 2026q-bio.PEscore 0

  7. Robust POMDP Framework for Lung Cancer Screening Problems

    Tong Li, Iakovos Toumazis, Yisha Xiang

    arXivSep 10, 2026q-bio.QMscore 0

  8. Polymerase-mediated quasispecies dynamics: bifurcations, complementation, and robustness of τ-tipping

    Edward A. Turner, Francisco Crespo, Nolbert Morales, Santiago F. Elena, Josep Sardanyes

    arXivSep 10, 2026q-bio.PEscore 0

  9. Persistence of n-Species Lotka-Volterra Models with Periodic Pulses

    Eleanor Courcelle, Jane Shaw MacDonald, Swati Patel

    arXivSep 8, 2026q-bio.PEscore 0

  10. Revisiting the Aerts-Broekaert-Smets quantum model of the liar paradox

    Massimiliano Sassoli de Bianchi

    arXivSep 7, 2026q-bio.NCscore 0

  11. Modeling Medea gene-drive population replacement: thresholds and release strategies

    Zhuolin Qu

    arXivSep 6, 2026q-bio.PEscore 0

  12. High-Order Triadic Functional Connectivity in the Brain and Beyond

    Qiang Li, Masoud Seraji, Yu-Ping Wang, Godfrey D Pearlson, Vince D Calhoun

    arXivSep 3, 2026q-bio.NCscore 0

  13. Spread of Chronic Wasting Disease under Stochastic Environmental Conditions and its Control using Deep Reinforcement Learning

    Wei Yin, Wesley J. Marrero, Kamal Jnawali, Lale Asik, Michael G. Tyshenko, Tamer Oraby

    arXivSep 3, 2026q-bio.PEscore 0

  14. Mutation--selection balance on an infinite trait space: confinement, drift and equilibrium

    Phil. Pollett

    arXivSep 2, 2026q-bio.PEscore 0

  15. A mechanistic modeling framework to interpret ACTH stimulation tests across HPA axis adaptation states and glucocorticoid feedback dynamics

    Mamta Yadav, Phool Singh

    arXivSep 1, 2026q-bio.QMscore 0

  16. Dimensionality-induced critical phase transition in stochastic Lotka-Volterra equation: From statistical averaging to systemic tipping point

    Xiu-deng Zheng, Cong Li, Hui Zhang, Hui-jie Qiao, Shao-peng Wang, Yi Tao

    arXivAug 31, 2026q-bio.PEscore 0

  17. Clustering versus sorting: a mass-conserving reaction-diffusion model of planar polarity puncta

    Sk Raj Hossein, Eman Alwani, Andreas Buttenschön, Alexander G. Fletcher

    arXivAug 30, 2026q-bio.SCscore 0

  18. Observation delays can bias inference of selective advantage in evolutionary competition

    Robert Valaska, Katarina Bodova

    arXivAug 30, 2026q-bio.PEscore 0

  19. A weighted model of perception and decision-making between targets of finite size

    W. Christopher Strickland, Andrew J. Bernoff

    arXivAug 27, 2026q-bio.NCscore 0

  20. Optimal long-run control of endemic infections: bang-bang threshold policies in a stochastic SIS model

    Matthew Buckland, Sören Christensen, Philip Le Borne, Cornelia Pokalyuk

    arXivAug 27, 2026q-bio.PEscore 0

  21. Tree Buckets and the Reconstruction of Pairs of Phylogenetic Trees

    Sky Basire, Michael Hendriksen

    arXivAug 26, 2026q-bio.PEscore 0

  22. Characterization of Minimal Degenerate Zero-One Reaction Networks

    Yuanlin Chen, Xiaoxian Tang

    arXivAug 19, 2026q-bio.MNscore 0

  23. Recovering protein conformations from single-particle cryo-EM data via indirect shape matching gradient flows

    Erik Jansson, Jonathan Krook, Ozan Öktem, Carola-Bibiane Schönlieb

    arXivAug 18, 2026q-bio.BMscore 0

  24. Dormancy stabilizes non-transitive competitive dynamics

    José Chacón, Adrián González-Casanova, Imanol Nuñez, Rafael Peña-Miller, José Luis Pérez, Johnny Yang

    arXivAug 17, 2026q-bio.PEscore 0

  25. Stochastic Spatial Metapopulation Modelling of HPAI Control and Poultry Restocking on Jolly Island

    Hammed O. Fatoyinbo, Indranil Ghosh, Parul Tiwari, Peter O. Olanipekun, Afeez Abidemi, Ryan H. L. Ip

    arXivAug 13, 2026q-bio.PEscore 0

  26. How many labels can a biological oscillator carry? A quality-factor screen for proposed information carriers

    Eran Kopel

    arXivAug 11, 2026q-bio.NCscore 0

  27. A fast diagonalization algorithm to enable singular value decomposition of large matrices for efficient template matching

    Matthew Giammar, Bronwyn Lucas, Alexander Strang

    arXivAug 9, 2026q-bio.QMscore 0

  28. A Physics-Informed Neural Network Approach to Multiphysics Continuum Modeling of Cancer Growth via Chemo-fluid Coupling

    Celia Taboada, Pedro Navas, Miguel Molinos

    arXivAug 8, 2026q-bio.QMscore 0

  29. Stochastic partial differential equation model for environmental DNA dynamics in river environments

    Hidekazu Yoshioka

    arXivAug 4, 2026q-bio.QMscore 0

  30. Identifiability of phylogenetic networks and quintet concordance factors

    Joseph Cummings, Maize Curiel, Bryan Currie, Bryson Kagy, Udani Ranasinghe, John A. Rhodes

    arXivAug 4, 2026q-bio.PEscore 0

  31. Population Structures with Positive Feedback and Asymmetric Division

    Gabriel Dooley, Camden Kilton, Brynley Needham, Graham Walther, Todd R. Young

    arXivAug 4, 2026q-bio.CBscore 0

  32. A Persistent Random-Walk Model of Molecular Transport in Neuronal Dendritic Trees

    Lasko Basnarkov

    arXivAug 2, 2026q-bio.SCscore 0

  33. Resource depletion accelerates rate learning but not composition learning in patch foraging

    Zachary P. Kilpatrick, Ahmed El Hady

    arXivJul 31, 2026q-bio.NCscore 0

  34. Why males compete rather than care, with an application to supplying collective goods

    Sara L. Loo, Danya Rose, Michael Weight, Kristen Hawkes, Peter S. Kim

    arXivJul 31, 2026q-bio.PEscore 0

  35. A data-driven stage-structured host-parasitoid model for optimizing Trichogramma interventions against soybean pod borer (Leguminivora glycinivorella) outbreaks

    Wenxuan Li, Xu Chen, Yu Gao, Suli Liu

    arXivJul 30, 2026q-bio.PEscore 0

  36. Multi-scale measures of time-varying epidemic spread on human mobility networks

    Cathal Mills, Benjamin Reddy, William S. Hart, Robin N. Thompson, Kris V. Parag, Moritz U. G. Kraemer, Christl A. Donnelly, Ben Lambert

    arXivJul 30, 2026q-bio.QMscore 0

  37. Identifying common backbones of interactions underlying food webs via non-deterministic alignments

    Yifan Xu, Carlos Taveras, Lydia Beaudrot, César A. Uribe

    arXivJul 29, 2026q-bio.PEscore 0

  38. A Tuning-Free Variational Framework for Muscle Redundancy Resolution: Torque Fiber Proximal Dynamics with Active-Set Switching and EMG-Validated Activation Prediction

    Morteza Ganji

    arXivJul 27, 2026q-bio.QMscore 0

  39. Model-based optimization of bacterial motility strategies for maximizing population yield

    Peize Yu, Sohei Tasaki

    arXivJul 24, 2026q-bio.PEscore 0

  40. Enumerating monophyletic characters in mathematical phylogenetics

    Mareike Fischer, Michael Hendriksen, Kristina Wicke

    arXivJul 24, 2026q-bio.PEscore 0

  41. Dynamics Decomposition of Boolean Networks: An algebraic foundation

    Alan Veliz-Cuba, Claus Kadelka, David Murrugarra, Matthew Wheeler, Kiara Boehringer, Benjamin Coberly, Reinhard Laubenbacher

    arXivJul 23, 2026q-bio.QMscore 0

  42. Spectral theory for population density dynamics of spiking neurons with refractoriness

    Luca Falorsi, Gianni Valerio Vinci., Maurizio Mattia

    arXivJul 22, 2026q-bio.NCscore 0

  43. Evolutionary Entropy Shapes Lifespan of the Greenland Shark

    Jorge Buescu, Saber N. Elaydi, Henrique M. Oliveira

    arXivJul 21, 2026q-bio.PEscore 0

  44. Exploring Brain Networks Using Noninvasive Electrophysiological Measurements: Methods and Applications

    Richard Leahy, Takfarinas Medani

    arXivJul 20, 2026q-bio.NCscore 0

  45. Evaluating the Impact of Epidemic Control via State-Dependent Markovian Switching Modeling

    Vasileios E. Papageorgiou, Irene Votsi, Samis Trevezas

    arXivJul 20, 2026q-bio.PEscore 0

  46. Gravity-Driven Eco-Epidemiological Dynamics in Tri-Trophic Food Chains

    Yuvrajsingh Pravinsingh Patil, Eckehard Schöll, Fakhteh Ghanbarnejad, Chandrakala Meena

    arXivJul 20, 2026q-bio.PEscore 0

  47. Classes of phylogenetic networks that are robust to root placement

    Thomas Britz, Michael Hendriksen, Kaitlyn O'Reilly

    arXivJul 17, 2026q-bio.PEscore 0

  48. Topology-Informed Survival Analysis of Breast Cancer Patients Using the Mapper Algorithm

    Emmanuel Kibisi, Olakunle Abawonse, Donald Woukeng

    arXivJul 16, 2026q-bio.GNscore 0

  49. Branching-Time Signatures of Growth Regime in Tumor Birth-Death Models

    Meng Wang, Zhangchi Weng, Jasmine Foo, Zicheng Wang

    arXivJul 13, 2026q-bio.PEscore 0

  50. Stochastic individual-bases models

    Anton Bovier, Anna Kraut

    arXivJul 13, 2026q-bio.PEscore 0

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