Open Research Index

217 records

  1. PHINN-EEG: Topological Time-Series Analysis of Dream-State EEG -- Dynamic Betti Curves for Dream Content Classification and Topology-Conditioned Neural Signal Synthesis

    Ren Takahashi, Emre Yusuf, Jayabrata Bhaduri

    arXivJul 10, 2026q-bio.NCscore 0

  2. A Path Integral Model of Cognition

    Haruki Emori, Kazunori Kondo, Atsushi Iriki, Andrei Khrennikov

    arXivJul 10, 2026q-bio.NCscore 0

  3. Impact of Nirsevimab prophylaxis on RSV dynamics: a stage-structured modelling study

    Anna Autoriello, Sabrina Averga, Bruno Buonomo, Rossella Della Marca, Alfredo Guarino, Andrea Lo Vecchio, Cristina Moracas, Emanuela Penitente

    arXivJul 9, 2026q-bio.PEscore 0

  4. Polynomial encoding of rooted trees with branch lengths

    Pengyu Liu, Joan Carles Pons, Gerard Ribas

    arXivJul 6, 2026q-bio.PEscore 0

  5. Diffusion bridge with randomized initial and terminal times and its application to fish migration

    Hidekazu Yoshioka, Mohammed Louriki

    arXivJul 5, 2026q-bio.PEscore 0

  6. Mathematical Model of Evolution of Non-Degenerate Replicator Systems

    Alexander S. Bratus, Sergey Drozhzhin, Tatiana Yakushkina

    arXivJul 5, 2026q-bio.PEscore 0

  7. Beyond DSA: Conjugacy-based Comparison of Dynamical Systems

    Prakhar Godara, Pang Shiang Tay, Marcelo G. Mattar

    arXivJul 5, 2026q-bio.NCscore 0

  8. Exponential Sigmoid Equation for Modelling Cell Growth in a Confined Space, Log-Normal Distribution for Modelling Cell Area Distribution of Dense Colonies and Other Methods

    Kavinda Jayawardana, Brad Turner

    arXivJul 1, 2026q-bio.QMscore 0

  9. Approximating Peak Prevalence in Multistage SIR Epidemics

    Denis Tverskoi, Andrew Gothard, Grzegorz A. Rempala

    arXivJul 1, 2026q-bio.PEscore 0

  10. Persistence, Thresholds, and Trait Composition in a Regulated Mutation-Selection Model

    Phil. Pollett

    arXivJun 30, 2026q-bio.PEscore 0

  11. Nonlinear Feedbacks Between Host Behavior and Vector Adaptation in a Multi-Host Vector-Borne Disease Model

    Shravani Shetgaonkar, Anupama Sharma

    arXivJun 30, 2026q-bio.PEscore 0

  12. Demographic senescence as multi-level selection in miniature

    Ananda Shikhara Bhat, Hanna Kokko

    arXivJun 30, 2026q-bio.PEscore 0

  13. Extended pseudo-spectral physics-informed neural networks for phase-field models

    Callum Marsh, Radek Erban, Andreas Munch

    arXivJun 23, 2026q-bio.QMscore 0

  14. The adaptive nature of confirmation bias

    Dorje C. Brody, Karl J. Friston, Bernhard K. Meister, Emmanuel M. Pothos

    arXivJun 22, 2026q-bio.NCscore 0

  15. Evolutionary Entropy Shapes Reproductive Lifespan in Age-Structured Populations

    Jorge Buescu, Saber Elaydi, Henrique Oliveira

    arXivJun 20, 2026q-bio.PEscore 0

  16. Delay coordinates synchronization and induces abrupt transition in excitable networks

    Bruno R. R. Boaretto, Kalel L. Rossi, Lyle E. Muller, Elbert E. Macau, Roberto C. Budzinski

    arXivJun 19, 2026q-bio.NCscore 0

  17. Multi-type branching inference on contact trees with application to COVID-19

    Augustine Okolie, Johannes Müller, Eno Akarawakc, Isaac Ajiboye

    arXivJun 17, 2026q-bio.QMscore 0

  18. Aggregation as a Double-Edged Sword: Fear, Allee Effects, and Finite-Time Collapse

    Kwadwo Antwi-Fordjour, Eric M. Takyi

    arXivJun 16, 2026q-bio.PEscore 0

  19. A nonlinear theory for chemotactic fronts of mixed populations

    Giulia L. Celora, Marjorie Watts, Carles Falcó, Mohit P. Dalwadi

    arXivJun 16, 2026q-bio.CBscore 0

  20. Tipping the Balance: Allee Thresholds, Saddle-Node Bifurcations, and Optimal Sterile-Male Release Strategies for Anopheles Mosquitoes

    Abba Gumel, C. Alex Safsten

    arXivJun 15, 2026q-bio.PEscore 0

  21. Boolean models coarsely sample continuous dynamics of regulatory networks

    Breschine Cummins, Marcio Gameiro, Tomáš Gedeon, Konstantin Mischaikow, Bernardo Rivas

    arXivJun 12, 2026q-bio.MNscore 0

  22. Implementation of Linear Regression and Linear Interpolation using Reaction Networks

    Aryan Kumar, Amey Choudhary, Jiaxin Jin, Chittaranjan Hens, Abhishek Deshpande

    arXivJun 10, 2026q-bio.MNscore 0

  23. Phase model analysis of the effect of M-current on neural synchrony in hippocampal networks

    Megha Manoj, Sue Ann Campbell

    arXivJun 10, 2026q-bio.NCscore 0

  24. Paving the way for AI agents in biology

    Anthropic

    Anthropic ScienceJun 8, 2026q-bioscore 0

  25. Nullclines, Subnullclines and the Asymptotic and Transient Attractors in Eco-Evolutionary Dynamics

    Krzysztof Argasinski, Manjyot Singh Bedi, Mark Broom

    arXivJun 5, 2026q-bio.PEscore 0

  26. $p$-adic Bi-Filtrations for Topological Machine Learning on Genomic Sequences

    Tirtharaj Dash, Gunja Sachdeva

    arXivJun 4, 2026q-bio.QMscore 0

  27. Quasi-birth-and-death processes evolving within trees: Applications to comparative phylogenetics

    Habtu Kiros Nigus, Barbara R. Holland, Malgorzata M. O'Reilly

    arXivJun 3, 2026q-bio.PEscore 0

  28. Evolution as a Process of Causal Inference

    Jacopo Iacovacci

    arXivJun 2, 2026q-bio.PEscore 0

  29. Quantifying the biophysical properties of stomatocytes in health and disease

    Zhaojie Chai, Jianlu Zheng, He Li, Ming Dao, George Em Karniadakis

    arXivJun 2, 2026q-bio.CBscore 0

  30. Phylogenetic dynamics of MRCA ages and empirical moments of a Brownian trait

    Gilles Didier

    arXivMay 28, 2026q-bio.PEscore 0

  31. Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading

    Ohad Vilk, Baruch Meerson

    arXivMay 28, 2026q-bio.PEscore 0

  32. Correcting hidden sampling biases in null models of canalizing Boolean networks

    Ahana Ghosh, Claus Kadelka

    arXivMay 22, 2026q-bio.MNscore 0

  33. Spatiotemporal dynamics and ecological risk factors of highly pathogenic avian influenza A(H5N1) in Canadian wildlife: A One Health surveillance analysis

    Hammed Olawale Fatoyinbo, Hoyeon Jeong

    arXivMay 21, 2026q-bio.PEscore 0

  34. Regularizing and Normalizing DAGs and Phylogenetic Networks

    Marc Hellmuth, Anna Lindeberg, Vincent Moulton

    arXivMay 20, 2026q-bio.PEscore 0

  35. Viability Space Decomposition: A geometric partition of survival outcomes in single- and multi-agent systems

    Connor McShaffrey, Randall D. Beer

    arXivMay 16, 2026q-bio.QMscore 0

  36. How nature discovers rare Turing islands: exploration by common limit cycles

    Seyoon Kim, Antonio Matas-Gil, Robert G. Endres

    arXivMay 15, 2026q-bio.CBscore 0

  37. Branching under First-Passage Resetting

    Aanjaneya Kumar, James Holehouse

    arXivMay 15, 2026q-bio.PEscore 0

  38. Approximate Macroscopic Dynamics of Spiking Neural Networks Based on Solutions to the Transport Equation

    Wilten Nicola, Sue Ann Campbell

    arXivMay 14, 2026q-bio.NCscore 0

  39. A geometry-dependent, force balance-driven model of Staphylococcus epidermidis biofilm cell cluster detachment

    Yuehui Xu, Jasmine A. F. Kreig, Zhuoran Wang, Elizabeth J. Stewart, Rayanne A. Luke, Sarah D. Olson

    arXivMay 14, 2026q-bio.QMscore 0

  40. Detecting and Correcting Sample-by-Sample Scale Distortion in RNA Sequencing Data

    Christopher Thron, Farhad Jafari

    arXivMay 10, 2026q-bio.GNscore 0

  41. Dynamical mechanisms of flexible phase-locking in cortical theta oscillators

    Yangyang Wang, Benjamin R. Pittman-Polletta

    arXivMay 8, 2026q-bio.NCscore 0

  42. Planar morphometry via functional shape data analysis and quasi-conformal mappings

    Hangyu Li, Gary P. T. Choi

    arXivMay 7, 2026q-bio.QMscore 0

  43. Chapter 2: Geometry of the Fitness Surface and Trajectory Dynamics of Replicator Systems

    A. S. Bratus, S. Drozhzhin, T. Yakushkina

    arXivMay 6, 2026q-bio.PEscore 0

  44. Emergent population dynamics of random walkers with cooperative reproduction and spatial selection

    Ohad Vilk, Baruch Meerson

    arXivMay 3, 2026q-bio.PEscore 0

  45. Numerical Reliability of Logistic Gene Regulatory Network Models: Preventing Expression Shutdown and Robust Integration of Boolean-Derived ODE Systems

    Ismail Belgacem

    arXivMay 1, 2026q-bio.MNscore 0

  46. Modelling the electrophysiological interactions between human pluripotent cell-derived cardiomyocite grafts and host ventricular tissue

    Suran Galappaththige, Vadim N Biktashev, Faisal J Alibhai, Michael Laflamme

    arXivMay 1, 2026q-bio.TOscore 0

  47. Theory of adhesion-driven self-organisation in growing tissues

    Carles Falcó, Samuel W. S. Johnson, Mohit P. Dalwadi, Philip K. Maini

    arXivApr 29, 2026q-bio.TOscore 0

  48. Host diversity and adaptive vector feeding preferences shape disease burden in vector-borne diseases

    Shravani Shetgaonkar, Anupama Sharma

    arXivApr 29, 2026q-bio.PEscore 0

  49. The Curse of Black Sigatoka: A Backward Bifurcation Perspective

    Bernard Asamoah Afful, Luis F. Gordillo

    arXivApr 28, 2026q-bio.PEscore 0

  50. Local growth laws determine global shape of molluscan shells

    Huan Liu, Kaushik Bhattacharya

    arXivApr 23, 2026q-bio.QMscore 0

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