Open Research Index

217 records

  1. Noise-Induced Transitions and Coherence Resonance in a 5D Conductance-Based Neuronal Model

    Yefan Wu

    arXivApr 23, 2026q-bio.NCscore 0

  2. The $γ_c$-Peak: Covariant Recovery on Four Organic Qubit Platforms

    Hikaru Wakaura, Taiki Tanimae

    arXivApr 22, 2026q-bio.NCscore 0

  3. Quantum-Like Models of Cognition and Decision Making: Open-Systems and Gorini--Kossakowski--Sudarshan--Lindblad Dynamics

    Masanari Asano, Andrei Khrennikov

    arXivApr 19, 2026q-bio.NCscore 0

  4. Simultaneous Fragment Docking for Geometrically Linkable Pose Pairs

    Jiyun Lee, You Kyoung Chung, Joonsuk Huh

    arXivApr 16, 2026q-bio.BMscore 0

  5. Phylogenetic Inference under the Balanced Minimum Evolution Criterion via Semidefinite Programming

    P. Skums

    arXivApr 14, 2026q-bio.PEscore 0

  6. Scale-dependent Temporal Signatures of Arboviral Transmission in Urban Environments

    Marcílio Ferreira dos Santos, Cleiton de Lima Ricardo

    arXivApr 10, 2026q-bio.PEscore 0

  7. A modular approach to achieve multistationarity using AND-gates

    Alan Veliz-Cuba, Zeyu Wang

    arXivApr 8, 2026q-bio.MNscore 0

  8. Quantum-like Cognition in Process Theories: An Analysis

    Sean Tull, Masanao Ozawa

    arXivApr 8, 2026q-bio.NCscore 0

  9. Mathematical Models of Evolution and Replicator Systems Dynamics

    A. S. Bratus, S. Drozhzhin, T. Yakushkina

    arXivApr 7, 2026q-bio.PEscore 0

  10. The physical basis of information flow in neural matter: a thermocoherent perspective on cognitive dynamics

    Onur Pusuluk

    arXivApr 5, 2026q-bio.NCscore 0

  11. Analytical characterisation of the Mi- and To-phases in HeMiTo dynamics: exponential growth and logistic saturation of toxic prion-like proteins

    Johannes G. Borgqvist

    arXivApr 1, 2026q-bio.QMscore 0

  12. VeloTree: Inferring single-cell trajectories from RNA velocity fields with varifold distances

    Elodie Maignant, Tim Conrad, Christoph von Tycowicz

    arXivApr 1, 2026q-bio.GNscore 0

  13. Markovian dephasing has no entanglement-breaking threshold, and a fixed tolerance will report one anyway

    Hikaru Wakaura, Taiki Tanimae

    arXivMar 31, 2026q-bio.NCscore 0

  14. Multi-scale Metabolic Modeling and Simulation

    Peter E. Carstensen, Teddy Groves, Lars K. Nielsen, Ulrich Krühne, Krist V. Gernaey, John B. Jørgensen

    arXivMar 27, 2026q-bio.QMscore 0

  15. QHap: Quantum-Inspired Haplotype Phasing

    Rui Zhang, Xian-Zhe Tao, Yibo Chen, Jiawei Zhang, Lei He, Dongming Fang, Lin Yang, Yuhui Sun

    arXivMar 26, 2026q-bio.GNscore 0

  16. Modeling the Disjunction Effect within Classical Probability: A New Decision Process Model and Comparison with Quantum-like Models

    Ryo Nasu, Yoshihiro Maruyama

    arXivMar 24, 2026q-bio.NCscore 0

  17. Spectral Geometry and Heat Kernels on Phylogenetic Trees

    Ángel Alfredo Morán Ledezma

    arXivMar 21, 2026q-bio.PEscore 0

  18. Assessing 3D tree model quality and species classification using imbalance indices

    Sophie J. Kersting, Mareike Fischer

    arXivMar 19, 2026q-bio.QMscore 0

  19. Curvature Sensitive Cells in the Modular Structures of The Visual Cortex

    Giovanna Citti, Vasiliki Liontou

    arXivMar 19, 2026q-bio.NCscore 0

  20. RAFT-UP: Robust Alignment for Spatial Transcriptomics with Explicit Control of Spatial Distortion

    Yaqi Wu, Jingfeng Wang, Xin Maizie Zhou, Yanxiang Zhao, Zixuan Cang

    arXivMar 18, 2026q-bio.QMscore 0

  21. Mathematical Modeling of Cancer-Bacterial Therapy: Analysis and Numerical Simulation via Physics-Informed Neural Networks

    Ayoub Farkane, David Lassounon

    arXivMar 18, 2026q-bio.QMscore 0

  22. A multiscale discrete-to-continuum framework for structured population models

    Eleonora Agostinelli, Keith L. Chambers, Helen M. Byrne, Mohit P. Dalwadi

    arXivMar 16, 2026q-bio.PEscore 0

  23. Pulse desynchronization of neural populations by targeting the centroid of the limit cycle in phase space

    Ramón Guevara, Marco Zenari, Giorgio Nicoletti, Elisa Marini, Samir Suweis, Sandro Azaele, Marco Formentin

    arXivMar 13, 2026q-bio.NCscore 0

  24. Ill-Conditioning in Dictionary-Based Dynamic-Equation Learning: A Systems Biology Case Study

    Yuxiang Feng, Niall M Mangan, Manu Jayadharan

    arXivMar 11, 2026q-bio.QMscore 0

  25. Sequential learning theory for Markov genealogy processes

    David J Pascall

    arXivMar 10, 2026q-bio.QMscore 0

  26. Duality in mass-action networks

    Alexandru Iosif

    arXivMar 9, 2026q-bio.MNscore 0

  27. Automated Classification of Homeostasis Structure in Input-Output Networks

    Xinni Lin, Fernando Antoneli, Yangyang Wang

    arXivMar 9, 2026q-bio.MNscore 0

  28. Parameter Identifiability Under Limited Experimental Data in Age-Structured Models of the Cell Cycle

    Ruby E. Nixson, Helen M. Byrne, Joe M. Pitt-Francis, Philip K. Maini

    arXivMar 6, 2026q-bio.CBscore 0

  29. Triangularity of the Jacobian on siphon faces, the Metzler property of its transversal component and other results

    Florin Avram, Rim Adenane, Andrei-Dan Halanay

    arXivMar 6, 2026q-bio.MNscore 0

  30. The Impact of Neglecting Vaccine Unwillingness in Epidemiology Models

    Glenn Ledder

    arXivMar 5, 2026q-bio.PEscore 0

  31. Topological bounds on the dynamical growth rate of chemical reaction networks

    Praful Gagrani, Jiwei Wang, Yannick De Decker, David Lacoste

    arXivMar 3, 2026q-bio.MNscore 0

  32. Approximate message passing for block-structured ecological systems

    Maxime Clenet, Mohammed-Younes Gueddari

    arXivMar 2, 2026q-bio.PEscore 0

  33. Lag-Induced Critical Transitions to Extinction in Replicating Systems

    Edward A. Turner, Francisco Crespo, Joan Gimeno, Ernest Fontich, Santiago F. Elena, Josep Sardanyés

    arXivMar 2, 2026q-bio.PEscore 0

  34. The interplay of selection and dormancy in a Moran model can lead to coexistence of types

    Jochen Blath, Baptiste Le Duigou, András Tóbiás

    arXivFeb 27, 2026q-bio.PEscore 0

  35. Spectral analysis of protein backbone geometry reveals abrupt helix--coil boundaries

    Yiquan Wang

    arXivFeb 25, 2026q-bio.BMscore 0

  36. Beyond Diagonal Noise: A Better Predator-Prey Modeling Framework with Cross-Covariance

    Jiguang Yu, Louis Shuo Wang

    arXivFeb 25, 2026q-bio.PEscore 0

  37. Synaptic Classification via Spike-Triggered Extrapolation

    Emilio De Santis

    arXivFeb 25, 2026q-bio.NCscore 0

  38. Characterization of Phase Transitions in a Lipkin-Meshkov-Glick Quantum Brain Model

    Elvira Romera, Joaquín J. Torres

    arXivFeb 24, 2026q-bio.NCscore 0

  39. Convex Analysis of Relaxation Dynamics in Chemical Reaction Networks and Generalized Gradient Flows

    Keisuke Sugie, Dimitri Loutchko, Tetsuya J. Kobayashi

    arXivFeb 21, 2026q-bio.MNscore 0

  40. Piecewise integrability of the discrete Hasimoto map for analytic prediction and design of helical peptides

    Yiquan Wang

    arXivFeb 18, 2026q-bio.BMscore 0

  41. Household size can explain 40% of the variance in cumulative COVID-19 incidence across Europe

    Seba Contreras, Philipp Dönges, Maciej Filinski, Joel Wagner, Viktor Bezborodov, Marcin Bodych, Barbara Pabjan, Franciszek Rakowski

    arXivFeb 17, 2026q-bio.PEscore 0

  42. Molecular Design beyond Training Data with Novel Extended Objective Functionals of Generative AI Models Driven by Quantum Annealing Computer

    Hayato Kunugi, Mohsen Rahmani, Yosuke Iyama, Yutaro Hirono, Akira Suma, Matthew Woolway, Vladimir Vargas-Calderón, William Kim

    arXivFeb 17, 2026q-bio.QMscore 0

  43. Hyb-Adam-UM: hybrid ultrametric-aware mtDNA phylogeny reconstruction

    Dmitrii Chaikovskii, Weilai Qu, Boris Melnikov, Ye Zhang, Yuehong Zhao

    arXivFeb 13, 2026q-bio.PEscore 0

  44. Descriptive power and predictive limits of a discrete Hasimoto--DNLS model of protein backbone structure

    Yiquan Wang

    arXivFeb 13, 2026q-bio.BMscore 0

  45. Multiple timescales in collective motion: daily and intraday upstream fish migration focusing on Feller condition

    Hidekazu Yoshioka

    arXivFeb 6, 2026q-bio.PEscore 0

  46. Deterministic and stochastic infection dynamics in a population subject to stress

    Clotilde Djuikem, Julien Arino

    arXivFeb 6, 2026q-bio.PEscore 0

  47. Recurrent neural chemical reaction networks trained to switch dynamical behaviours through learned bifurcations

    Alexander Dack, Tomislav Plesa, Thomas E. Ouldridge

    arXivFeb 2, 2026q-bio.MNscore 0

  48. Multi-strain SIS dynamics with coinfection under host population structure

    Sten Madec, Nicola Cinardi, Erida Gjini

    arXivJan 30, 2026q-bio.PEscore 0

  49. Stroboscopic motion reversals in delay-coupled neural fields

    Noah Parks, Zachary P Kilpatrick

    arXivJan 27, 2026q-bio.NCscore 0

  50. Emergent spatial organization of competing species under environmental stress and cooperation

    Ton Viet Ta

    arXivJan 27, 2026q-bio.PEscore 0

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